-
Recent Posts
Recent Comments
Archives
- April 2021
- January 2021
- December 2020
- November 2020
- October 2020
- November 2014
- October 2014
- September 2014
- August 2014
- May 2014
- April 2014
- March 2014
- October 2013
- September 2013
- August 2013
- June 2013
- April 2013
- March 2013
- September 2012
- July 2012
- May 2012
- April 2012
- March 2012
- February 2012
- January 2012
- November 2011
- October 2011
- September 2011
- August 2011
- July 2011
- June 2011
- May 2011
- March 2011
- February 2011
- January 2011
- December 2010
- November 2010
- October 2010
- September 2010
- August 2010
- July 2010
Categories
Meta
Tag Archives: R
Creating an R package
I recently put all the EcoIP application into an R package. I was surprised at how easy it was and I wanted to share my experience :) Root Path Everything that is to be packaged needs to be in a … Continue reading
Posted in R
Tagged package, R, R build, R check, R Description, R help pages, R man directory, R namespace, R package
Leave a comment
R. create a plot with non overlapping labels
The X axis labels were a bit long and they were having trouble fitting into the plot correctly. I tried various solutions: R’s default and maptool’s pointLabel. The first did not really allow me to turn the labels 90 deg … Continue reading
Posted in commands, R
Tagged label font size, labels, non overlapping labels, par, R, X axis, x axis size
Leave a comment
The Flower counting algorithm lives
I recently finished a flower counting algorithm and am very happy with the results. While the test was done with an easy set of images (yellow flowers over brown ground), I wanted to celebrate an important milestone in the project with … Continue reading
Posted in annotation, PhD
Tagged bayesian model, blobls, flower counting algorithm, morphology, naive bayesian model, plants, R
Leave a comment
Very Painful EBImage install on Windows
Short Version Follow this to install EBImage Go here to get GTK+. I used this one. Make sure you add the GTK+ “bin” directory to the path. If you have zlib1.dll problems, or any problems regarding the specific dll that is … Continue reading
Posted in commands, R
Tagged deflateSetHeader, EBImage, GTK+, ImageMagick, install EBImage, Process Explorer, R, RGui, Windows, zlib1.dll
Leave a comment
Rscript, where were you all along?
One of the things that I did not like about using R was that there was not “easy” way of calling it in a command sort of way. The test part of my R workflow consisted in going into the … Continue reading
Posted in commands, PhD, R
Tagged command args, command arguments, commandArgs, CRAN getopt, getopt, getoptparse, parse arguments, R, Rscript, script arguments
Leave a comment